3VUY

Crystal structure of A20 ZF7 in complex with linear tetraubiquitin

Structural Biology Knowledgebase: 3VUY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.98 Å
  • R-Value Free: 0.255
  • R-Value Work: 0.216

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3VUY

Classification: PROTEIN BINDING / METAL BINDING PROTEIN

Total Structure Weight: 37973.86

Macromolecule Entities
Molecule Chains Length Organism Details
Polyubiquitin-C A, B, C 76 Homo sapiens Fragment: Ubiquitin
Gene Name(s): UBC Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Tumor necrosis factor alpha-induced protein 3 D, E, F 35 Homo sapiens EC#: 3.4.19.12 IUBMB 6.3.2 IUBMB
Fragment: A20-type 7 Zinc finger domain, residues 757-790
Gene Name(s): TNFAIP3 Gene View OTUD7C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

D, E, F ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
K
Query on K

D, E, F POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.98 Å
  • R-Value Free: 0.255
  • R-Value Work: 0.216
  • Space Group: P 31
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 62.44 α = 90.00
b = 62.44 β = 90.00
c = 85.36 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-07-09
  • Released Date: 2013-02-13
  • Deposition author(s): Nishimasu, H., Ishitani, R., Nureki, O.

Revision History

No revisions since initial release