3VUK

Crystal structure of a cysteine-deficient mutant M5 in MAP kinase JNK1

Structural Biology Knowledgebase: 3VUK SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.302
  • R-Value Work: 0.225

Literature

Macromolecules
Sequence Display for 3VUK

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 44279.29

Macromolecule Entities
Molecule Chains Length Organism Details
Mitogen-activated protein kinase 8 A 370 Homo sapiens EC#: 2.7.11.24 IUBMB
Fragment: kinase domain, UNP residues 1-364
Mutation: C79V, C116S, C137V, C163A, C245S
Gene Name(s): MAPK8 Gene View JNK1 PRKM8 SAPK1 SAPK1C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Peptide from C-Jun-amino-terminal kinase-interacting protein 1 F 11 Homo sapiens Gene Name(s): MAPK8IP1 Gene View IB1 JIP1 PRKM8IP
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.302
  • R-Value Work: 0.225
  • Space Group: I 4 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 169.55 α = 90.00
b = 169.55 β = 90.00
c = 87.28 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-07-02
  • Released Date: 2013-02-13
  • Deposition author(s): Nakaniwa, T., Kinoshita, T., Inoue, T.

Revision History

No revisions since initial release