3VNW

Crystal structure of cytochrome c552 from Thermus thermophilus at pH 5.44

Structural Biology Knowledgebase: 3VNW SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.97 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.213

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3VNW

Classification: ELECTRON TRANSPORT

Total Structure Weight: 14611.99

Macromolecule Entities
Molecule Chains Length Organism Details
Cytochrome c-552 A 129 Thermus thermophilus Gene Name(s): cycA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.97 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.213
  • Space Group: P 65
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 86.98 α = 90.00
b = 86.98 β = 90.00
c = 31.82 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-01-18
  • Released Date: 2013-01-23
  • Deposition author(s): Yamada, S., Bouley-Ford, N.D., Keller, G.E., Winkler, J.R., Gray, H.B.

Revision History

  • 2013-02-06
    Type: Citation | Details: Citation update