3VLJ

Crystal Structure Analysis of the Cyanide Arg409Leu Variant Complexes with o-Dianisidine in KatG from HALOARCULA MARISMORTUI

Structural Biology Knowledgebase: 3VLJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.216

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3VLJ

Classification: Oxidoreductase

Total Structure Weight: 166265.21

Macromolecule Entities
Molecule Chains Length Organism Details
Catalase-peroxidase 2 A, B 737 Haloarcula marismortui EC#: 1.11.1.21 IUBMB
Mutation: R409L
Gene Name(s): katG2 Hmcp rrnAC1171

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A, B PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DDJ
Query on DDJ

A, B 3,3'-dimethoxybiphenyl-4,4'-diamine
o-Dianisidine (Synonym)
C14 H16 N2 O2
JRBJSXQPQWSCCF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CYN
Query on CYN

A, B CYANIDE ION
C N
XFXPMWWXUTWYJX-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.216
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 315.21 α = 90.00
b = 80.76 β = 99.50
c = 75.43 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-12-01
  • Released Date: 2012-12-05
  • Deposition author(s): Sato, T., Higuchi, W., Yoshimatsu, K., Fujiwara, T.

Revision History

No revisions since initial release