3VD0

structure of p73 DNA binding domain tetramer modulates p73 transactivation

Structural Biology Knowledgebase: 3VD0 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.235

Literature

Macromolecules
Sequence Display for 3VD0

Classification: ANTITUMOR PROTEIN / DNA

Total Structure Weight: 220039.39


Macromolecule Entities
Molecule Chains Length Organism Details
Tumor protein p73 A, B, C..., D, I, J, K, LA, B, C, D, I, J, K, L 210 Homo sapiens Fragment: unp residue 115-312
Gene Name(s): TP73 Gene View P73
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*CP*AP*GP*GP*CP*AP*TP*GP*CP*CP*TP*G)-3') E, F, G... , H, M, N, O, P E, F, G, H, M, N, O, P 12 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B, C, D, I, J, K, L ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.235
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 82.09 α = 90.00
b = 104.52 β = 96.18
c = 122.99 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-01-04
  • Released Date: 2012-04-18
  • Deposition author(s): Ethayathulla, A.S., Tse, P.W., Nguyen, S., Viadiu, H.

Revision History

  • 2014-10-08
    Type: Entry authorship | Details: --
  • 2012-07-25
    Type: Citation | Details: Citation update