3V7L

Apo Structure of Rat DNA polymerase beta K72E variant


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.66 Å
  • R-Value Free: 0.335
  • R-Value Work: 0.256

Literature

Macromolecules
Sequence Display for 3V7L

Classification: TRANSFERASE

Total Structure Weight: 39271.32

Macromolecule Entities
Molecule Chains Length Organism Details
DNA polymerase beta A 340 Rattus norvegicus EC#: 2.7.7.7 IUBMB 4.2.99 IUBMB
Mutation: K72E
Gene Name(s): Polb
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.66 Å
  • R-Value Free: 0.335
  • R-Value Work: 0.256
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 37.42 α = 90.00
b = 71.39 β = 90.52
c = 82.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-12-21
  • Released Date: 2013-01-16
  • Deposition author(s): Rangarajan, S., Jaeger, J.

Revision History

  • Version 1_0: 2013-01-16

    Type: Initial release

  • Version 1_1: 2017-11-08

    Type: Advisory, Refinement description