3UQ9

Adenosine kinase from Schistosoma mansoni in complex with tubercidin

Structural Biology Knowledgebase: 3UQ9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.34 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.171

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3UQ9

Classification: TRANSFERASE

Total Structure Weight: 84089.67

Macromolecule Entities
Molecule Chains Length Organism Details
Adenosine kinase, putative A, B 372 Schistosoma mansoni EC#: 2.7.1.20 IUBMB
Gene Name(s): Smp_008360

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TBN
Query on TBN

A, B '2-(4-AMINO-PYRROLO[2,3-D]PYRIMIDIN-7-YL)- 5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL
7-DEAZAADENOSINE (Synonym)
C11 H14 N4 O4
HDZZVAMISRMYHH-KCGFPETGSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.34 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.171
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 59.56 α = 90.00
b = 180.51 β = 90.00
c = 78.55 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-11-19
  • Released Date: 2012-10-31
  • Deposition author(s): Romanello, L., Cassago, A., Bachega, F.R., Garatt, R.C., DeMarco, R., Pereira, H.M.

Revision History

  • 2013-01-16
    Type: Citation | Details: Citation update
  • 2013-01-02
    Type: Citation | Details: Citation update