3UK3

Crystal structure of ZNF217 bound to DNA

Structural Biology Knowledgebase: 3UK3 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.224

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3UK3

Classification: DNA / METAL BINDING PROTEIN

Total Structure Weight: 26522.13


Macromolecule Entities
Molecule Chains Length Organism Details
Zinc finger protein 217 C, D 57 Homo sapiens Fragment: Zinc fingers 6 and 7 (UNP RESIDUES 469-523)
Gene Name(s): ZNF217 Gene View ZABC1
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*TP*TP*TP*GP*CP*AP*GP*AP*AP*TP*CP*GP*AP*TP*TP*CP*TP*GP*CP*A)-3' A 20 synthetic
5'-D(*AP*AP*TP*GP*CP*AP*GP*AP*AP*TP*CP*GP*AP*TP*TP*CP*TP*GP*CP*A)-3' B 20 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

B, C, D ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

C CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.224
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 124.67 α = 90.00
b = 40.98 β = 97.21
c = 52.04 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-11-08
  • Released Date: 2012-12-05
  • Deposition author(s): Vandevenne, M.S., Jacques, D.A., Guss, J.M., Mackay, J.P.

Revision History

No revisions since initial release