3UFD

C.Esp1396I bound to its highest affinity operator site OM

Structural Biology Knowledgebase: 3UFD SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.206

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3UFD

Classification: DNA BINDING PROTEIN / DNA

Total Structure Weight: 61415.83


Macromolecule Entities
Molecule Chains Length Organism Details
Regulatory protein A, B, E, F 82 Enterobacter sp. rfl1396 Gene Name(s): esp1396IC
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*AP*TP*GP*TP*AP*GP*AP*CP*TP*AP*TP*AP*GP*TP*CP*GP*AP*CP*A)-3') C, G 19 synthetic OM 19-mer
DNA (5'-D(*TP*TP*GP*TP*CP*GP*AP*CP*TP*AP*TP*AP*GP*TP*CP*TP*AP*CP*A)-3') D, H 19 synthetic OM 19-mer

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CL
Query on CL

B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.206
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 47.49 α = 90.00
b = 147.10 β = 93.68
c = 47.78 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-11-01
  • Released Date: 2012-07-11
  • Deposition author(s): Ball, N.J., McGeehan, J.E., Streeter, S.D., Thresh, S.-J., Kneale, G.G.

Revision History

  • 2014-11-12
    Type: Entry authorship | Details: --
  • 2012-12-19
    Type: Citation | Details: Citation update
  • 2012-09-12
    Type: Citation | Details: Citation update