3TVL

Complex between the human thiamine triphosphatase and triphosphate

Structural Biology Knowledgebase: 3TVL SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.180

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3TVL

Classification: HYDROLASE

Total Structure Weight: 51892.23

Macromolecule Entities
Molecule Chains Length Organism Details
Thiamine-triphosphatase A, B 230 Homo sapiens EC#: 3.6.1.28 IUBMB
Gene Name(s): THTPA Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
3PO
Query on 3PO

A, B TRIPHOSPHATE
H5 O10 P3
UNXRWKVEANCORM-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
3PO N/A in BindingDB
N/A in BindingMoad
Kd: 100000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.180
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 46.38 α = 90.00
b = 63.53 β = 108.75
c = 70.95 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-09-20
  • Released Date: 2012-10-10
  • Deposition author(s): Delvaux, D., Herman, R., Sauvage, E., Wins, P., Bettendorff, L., Charlier, P., Kerff, F.

Revision History

  • 2013-07-17
    Type: Citation | Details: Citation update
  • 2013-06-12
    Type: Citation | Details: Citation update