3TGO

Crystal structure of the E. coli BamCD complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.177

Literature

Macromolecules
Sequence Display for 3TGO

Classification: MEMBRANE PROTEIN

Total Structure Weight: 122239.34

Macromolecule Entities
Molecule Chains Length Organism Details
UPF0169 lipoprotein yfiO A, B 229 Escherichia coli Fragment: UNP residues 21-245
Gene Name(s): bamD yfiO b2595 JW2577
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Lipoprotein 34 C, D 323 Escherichia coli Fragment: UNP residues 26-344
Gene Name(s): bamC dapX nlpB b2477 JW2462
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: BETA-BARREL

Subgroup Name: Omp85-TpsB Outer Membrane Transporter Superfamily

Protein Name: BamCD complex of the Bam β-barrel assembly machine


Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PO4
Query on PO4

C PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B, D GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
K
Query on K

A POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

D SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.177
  • Space Group: I 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 73.78 α = 90.00
b = 133.38 β = 100.15
c = 144.99 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-08-17
  • Released Date: 2011-09-28
  • Deposition author(s): Paetzel, M., Kim, K.H., Aulakh, S.

Revision History

  • 2011-11-16
    Type: Citation | Details: Citation update