3S80

Crystal form 2 of a chiral ruthenium complex bound to DNA

Structural Biology Knowledgebase: 3S80 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.92 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.173

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3S80

Classification: DNA

Total Structure Weight: 4148.73

Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3' A 10 synthetic

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
RKL
Query on RKL

A Ru(tap)2(dppz) complex
C38 H22 N12 Ru
PIKVAZQLFXBUSD-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
RKT
Query on RKT

A pyrazino[2,3-f]quinoxaline
C10 H6 N4
CVSGFMWKZVZOJD-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BA
Query on BA

A BARIUM ION
Ba
XDFCIPNJCBUZJN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.92 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.173
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 44.35 α = 90.00
b = 44.35 β = 90.00
c = 27.20 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2011-05-27
  • Released Date: 2012-05-30
  • Deposition author(s): Cardin, C.J., Hall, J.P.

Revision History

No revisions since initial release