3RSV

Structure of Bace-1 (Beta-Secretase) in complex with (R)-3-(2-amino-6-o-tolylquinolin-3-yl)-N-((R)-2,2-dimethyltetrahydro-2H-pyran-4-yl)-2-methylpropanamide

Structural Biology Knowledgebase: 3RSV SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.218

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3RSV

Classification: Hydrolase / Hydrolase Inhibitor

Total Structure Weight: 47038.41

Macromolecule Entities
Molecule Chains Length Organism Details
Beta-secretase 1 A 411 Homo sapiens EC#: 3.4.23.46 IUBMB 4.3.1.23 IUBMB
Fragment: UNP residues 43-453
Mutation: R-5K, R-4K
Gene Name(s): BACE1 Gene View BACE KIAA1149

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
3RS
Query on 3RS

A (2R)-3-[2-amino-6-(2-methylphenyl)quinolin- 3-yl]-N-[(4R)-2,2-dimethyltetrahydro-2H-pyran- 4-yl]-2-methylpropanamide
C27 H33 N3 O2
QMSHBBGXSXAGOO-XMSQKQJNSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IOD
Query on IOD

A IODIDE ION
I
XMBWDFGMSWQBCA-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
3RS IC50: 0.7 - 18 nM (99) BindingDB

IC50: 0.7 nM  BindingMOAD
IC50: 0.7 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.218
  • Space Group: P 61 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 103.42 α = 90.00
b = 103.42 β = 90.00
c = 169.54 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-05-02
  • Released Date: 2011-08-31
  • Deposition author(s): Sickmier, E.A.

Revision History

No revisions since initial release