3QLZ

Candida glabrata dihydrofolate reductase complexed with NADPH and 5-[3-(2,5-dimethoxyphenyl)prop-1-yn-1-yl]-6-propylpyrimidine-2,4-diamine (UCP130B)

Structural Biology Knowledgebase: 3QLZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.94 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.206

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3QLZ

Classification: OXIDOREDUCTASE / OXIDOREDUCTASE INHIBITOR

Total Structure Weight: 55071.56

Macromolecule Entities
Molecule Chains Length Organism Details
Strain CBS138 chromosome J complete sequence A, B 227 Candida glabrata Gene Name(s): CAGL0J03894g

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NDP
Query on NDP

A, B NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
C21 H30 N7 O17 P3
ACFIXJIJDZMPPO-NNYOXOHSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
QLZ
Query on QLZ

A, B 5-[3-(2,5-dimethoxyphenyl)prop-1-yn-1-yl]- 6-propylpyrimidine-2,4-diamine
C18 H22 N4 O2
VSWSZIRWLYCVMG-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
QLZ N/A in BindingDB
IC50: 15 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.94 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.206
  • Space Group: P 41
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 42.61 α = 90.00
b = 42.61 β = 90.00
c = 230.24 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-02-03
  • Released Date: 2011-07-20
  • Deposition author(s): Paulsen, J.L., Bendel, S.D., Anderson, A.C.

Revision History

  • 2013-11-20
    Type: Non-polymer description | Details: Change NAP to NDP to reflect NADPH species
  • 2011-09-28
    Type: Citation | Details: Citation update