3QKY

Crystal structure of Rhodothermus marinus BamD

Structural Biology Knowledgebase: 3QKY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.169

Literature

Macromolecules
Sequence Display for 3QKY

Classification: MEMBRANE PROTEIN

Total Structure Weight: 30879.74

Macromolecule Entities
Molecule Chains Length Organism Details
Outer membrane assembly lipoprotein YfiO A 261 Rhodothermus marinus Fragment: Residues 24-280
Gene Name(s): Rmar_0679
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: BETA-BARREL

Subgroup Name: Omp85-TpsB Outer Membrane Transporter Superfamily

Protein Name: BamD component of the Bam β-barrel assembly machine



Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.169
  • Space Group: H 3
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 114.37 α = 90.00
b = 114.37 β = 90.00
c = 77.63 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-02-02
  • Released Date: 2011-04-20
  • Deposition author(s): Sandoval, C.M., Baker, S.L., Jansen, K., Metzner, S.I., Sousa, M.C.

Revision History

  • 2011-11-16
    Type: Atom occupancy | Details: Atom occupancy
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4