3PNI

Crystal structure of D14C [3Fe-4S] Pyrococcus furiosus ferredoxin

Structural Biology Knowledgebase: 3PNI SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.318
  • R-Value Work: 0.279

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3PNI

Classification: ELECTRON TRANSPORT

Total Structure Weight: 15145.48

Macromolecule Entities
Molecule Chains Length Organism Details
Ferredoxin A, B 66 Pyrococcus furiosus Fragment: Ferredoxin
Mutation: D14C
Gene Name(s): fdxA PF1909
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
F3S
Query on F3S

A, B FE3-S4 CLUSTER
Fe3 S4
FCXHZBQOKRZXKS-MZMDZPPWAW
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CO
Query on CO

A, B COBALT (II) ION
Co
XLJKHNWPARRRJB-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.318
  • R-Value Work: 0.279
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 47.40 α = 90.00
b = 49.80 β = 90.00
c = 51.23 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-11-19
  • Released Date: 2011-04-13
  • Deposition author(s): Loevgreen, M.N., Christensen, H.E.M., Harris, P.

Revision History

  • 2013-06-19
    Type: Citation | Details: Citation update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4