3PHH

Shikimate 5-Dehydrogenase (aroE) from Helicobacter pylori in complex with Shikimate

Structural Biology Knowledgebase: 3PHH SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.42 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.197

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3PHH

Classification: OXIDOREDUCTASE

Total Structure Weight: 30313.35

Macromolecule Entities
Molecule Chains Length Organism Details
Shikimate dehydrogenase A 269 Helicobacter pylori EC#: 1.1.1.25 IUBMB
Gene Name(s): aroE HP_1249

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SKM
Query on SKM

A (3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE- 1-CARBOXYLIC ACID
SHIKIMATE (Synonym)
C7 H10 O5
JXOHGGNKMLTUBP-HSUXUTPPSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.42 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.197
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 46.37 α = 90.00
b = 62.80 β = 90.00
c = 84.38 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-11-04
  • Released Date: 2011-11-09
  • Deposition author(s): Cheng, W.C., Lin, S.C., Wang, W.C.

Revision History

No revisions since initial release