3P1L

Crystal structure of Escherichia coli BamB, a lipoprotein component of the beta-barrel assembly machinery complex, native crystals.

Structural Biology Knowledgebase: 3P1L SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.195

Literature

Macromolecules
Sequence Display for 3P1L

Classification: PROTEIN BINDING

Total Structure Weight: 42105.22

Macromolecule Entities
Molecule Chains Length Organism Details
Lipoprotein yfgL A 393 Escherichia coli Gene Name(s): bamB yfgL b2512 JW2496
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: BETA-BARREL

Subgroup Name: Omp85-TpsB Outer Membrane Transporter Superfamily

Protein Name: BamB component of the Bam β-barrel assembly machine


Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.195
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 101.71 α = 90.00
b = 101.71 β = 90.00
c = 108.78 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-09-30
  • Released Date: 2010-12-22
  • Deposition author(s): Kim, K.H., Paetzel, M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4