3L2P

Human DNA Ligase III Recognizes DNA Ends by Dynamic Switching Between Two DNA Bound States

Structural Biology Knowledgebase: 3L2P SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.233

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3L2P

Classification: LIGASE / DNA

Total Structure Weight: 78875.06


Macromolecule Entities
Molecule Chains Length Organism Details
DNA ligase 3 A 579 Homo sapiens EC#: 6.5.1.1 IUBMB
Fragment: UNP residues 257-833
Gene Name(s): LIG3 Gene View
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(P*CP*GP*GP*GP*AP*TP*GP*CP*GP*TP*C)-3' B 11 synthetic
5'-D(*GP*TP*CP*GP*GP*AP*CP*TP*G)-3' C 9 synthetic
5'-D(*GP*CP*CP*AP*GP*TP*CP*CP*GP*AP*CP*GP*AP*CP*GP*CP*AP*TP*CP*CP*CP*G)-3' D 22 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AMP
Query on AMP

A ADENOSINE MONOPHOSPHATE
C10 H14 N5 O7 P
UDMBCSSLTHHNCD-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.233
  • Space Group: P 41 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 130.15 α = 90.00
b = 130.15 β = 90.00
c = 150.43 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-12-15
  • Released Date: 2010-07-14
  • Deposition author(s): Cotner-Gohara, E.A., Kim, I.K., Hammel, M., Tainer, J.A., Tomkinson, A., Ellenberger, T.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4