3ANZ

Crystal Structure of alpha-hemolysin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.193

Literature

Macromolecules
Sequence Display for 3ANZ

Classification: TOXIN

Total Structure Weight: 974485.63

Macromolecule Entities
Molecule Chains Length Organism Details
Alpha-hemolysin A, B, C..., D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, a, bA, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, a, b 302 Staphylococcus aureus Gene Name(s): SAV1163
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: BETA-BARREL

Subgroup Name: Adventitious Membrane Proteins: Beta-sheet Pore-forming Toxins/Attack Complexes

Protein Name: α-hemolysin


Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MPD
Query on MPD

A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, a, b (4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACY
Query on ACY

A, C, D, E, F, H, J, K, L, M, O, P, Q, S, T, V, W, X, Y, Z, a, b ACETIC ACID
C2 H4 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.193
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 102.82 α = 90.00
b = 293.88 β = 92.42
c = 170.54 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-09-16
  • Released Date: 2011-06-22
  • Deposition author(s): Yamashita, K., Kawauchi, H., Tanaka, Y., Yao, M., Tanaka, I.

Revision History

  • 2011-08-10
    Type: Other | Details: update MTRIXn records
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4