316D

Selectivity of F8-actinomycin D for RNA:DNA hybrids and its anti-leukemia activity


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.212

Literature

Macromolecules
Sequence Display for 316D

Classification: DNA / ANTIBIOTIC

Total Structure Weight: 6130.67


Macromolecule Entities
Molecule Chains Length Organism Details
8-FLUORO-ACTINOMYCIN D C 11 Streptomyces antibioticus Mutation: X6X
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*GP*AP*AP*GP*CP*TP*TP*C)-3') A, B 8 synthetic

Small Molecules
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_000006
Query on PRD_000006
C 8-Fluoro-Actinomycin D Polypeptide /
Antibiotic
Ligand Explorer

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.212
  • Space Group: P 31 2 1

Unit Cell:

Length (Å) Angle (°)
a = 62.77 α = 90.00
b = 62.77 β = 90.00
c = 43.03 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1997-03-05
  • Released Date: 1997-11-05
  • Deposition author(s): Takusagawa, F., Takusagawa, K.T., Carlson, R.G., Weaver, R.F.

Revision History

  • 2011-06-14
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance
  • 2011-07-27
    Type: Atomic model, Database references, Derived calculations, Non-polymer description, Structure summary
  • 2012-12-12
    Type: Other