2YQ2

Structure of BVDV1 envelope glycoprotein E2, pH8

Structural Biology Knowledgebase: 2YQ2 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.58 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.240

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2YQ2

Classification: VIRAL PROTEIN

Total Structure Weight: 77644.95

Macromolecule Entities
Molecule Chains Length Organism Details
BVDV1 E2 A, B 337 Bovine viral diarrhea virus 1 Fragment: BVDV1 E2 ECTODOMAIN, RESIDUES 1-337
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.58 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.240
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 132.18 α = 90.00
b = 47.59 β = 108.15
c = 159.29 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-11-04
  • Released Date: 2013-01-16
  • Deposition author(s): El Omari, K., Iourin, O., Harlos, K., Grimes, J.M., Stuart, D.I.

Revision History

  • 2013-02-20
    Type: Citation | Details: JRNL