2YNI

HIV-1 Reverse Transcriptase in complex with inhibitor GSK952

Structural Biology Knowledgebase: 2YNI SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.49 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.202

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2YNI

Classification: HYDROLASE

Total Structure Weight: 117749.59

Macromolecule Entities
Molecule Chains Length Organism Details
REVERSE TRANSCRIPTASE/RIBONUCLEASE H A 563 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB 2.7.7.7 IUBMB 3.1.13.2 IUBMB 3.1.26.13 IUBMB
Gene Name(s): gag-pol
P51 RT B 447 Human immunodeficiency virus 1 Fragment: RESIDUES 588-1015
Gene Name(s): gag-pol

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CXD
Query on CXD

A 4-chloranyl-N-[[4-chloranyl-3-(3-chloranyl- 5-cyano-phenoxy)-2-fluoranyl-phenyl]methyl]- 1H-imidazole-5-carboxamide
C18 H10 Cl3 F N4 O2
FCSGFPSBYUHMIF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
TAR
Query on TAR

A D(-)-TARTARIC ACID
C4 H6 O6
FEWJPZIEWOKRBE-LWMBPPNESA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.49 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.202
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 118.50 α = 90.00
b = 154.58 β = 90.00
c = 156.41 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-10-15
  • Released Date: 2013-01-09
  • Deposition author(s): Chong, P., Sebahar, P., Youngman, M., Garrido, D., Zhang, H., Stewart, E.L., Nolte, R.T., Wang, L., Ferris, R.G., Edelstein, M., Weaver, K., Mathis, A., Peat, A.

Revision History

  • 2013-12-18
    Type: Entry title | Details: TITLE