2YNF

HIV-1 Reverse Transcriptase Y188L mutant in complex with inhibitor GSK560

Structural Biology Knowledgebase: 2YNF SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.36 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.197

Literature

Macromolecules
Sequence Display for 2YNF

Classification: HYDROLASE

Total Structure Weight: 117807.65

Macromolecule Entities
Molecule Chains Length Organism Details
REVERSE TRANSCRIPTASE/RIBONUCLEASE H A 563 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB 2.7.7.7 IUBMB 3.1.13.2 IUBMB 3.1.26.13 IUBMB
Mutation: Y188L
Gene Name(s): gag-pol
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
P51 RT B 447 Human immunodeficiency virus 1 Fragment: RESIDUES 588-1015
Gene Name(s): gag-pol

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
WHU
Query on WHU

A 2-azanyl-N-[[4-bromanyl-3-(3-chloranyl-5- cyano-phenoxy)-2-fluoranyl-phenyl]methyl]- 4-chloranyl-1H-imidazole-5-carboxamide
C18 H11 Br Cl2 F N5 O2
IZRLYEGHBQTAFO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
TAR
Query on TAR

A D(-)-TARTARIC ACID
C4 H6 O6
FEWJPZIEWOKRBE-LWMBPPNESA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.36 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.197
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 119.58 α = 90.00
b = 154.51 β = 90.00
c = 157.03 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-10-14
  • Released Date: 2013-01-09
  • Deposition author(s): Chong, P., Sebahar, P., Youngman, M., Garrido, D., Zhang, H., Stewart, E.L., Nolte, R.T., Wang, L., Ferris, R.G., Edelstein, M., Weaver, K., Mathis, A., Peat, A.

Revision History

No revisions since initial release