2YH5

Structure of the C-terminal domain of BamC

Structural Biology Knowledgebase: 2YH5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.25 Å
  • R-Value Free: 0.184
  • R-Value Work: 0.146

Literature

Macromolecules
Sequence Display for 2YH5

Classification: LIPID BINDING PROTEIN

Total Structure Weight: 14088.51

Macromolecule Entities
Molecule Chains Length Organism Details
DAPX PROTEIN A 127 Escherichia coli Fragment: RESIDUES 25-143
Gene Name(s): bamC dapX nlpB b2477 JW2462
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: BETA-BARREL

Subgroup Name: Omp85-TpsB Outer Membrane Transporter Superfamily

Protein Name: BamC component of the Bam β-barrel assembly machine


Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.25 Å
  • R-Value Free: 0.184
  • R-Value Work: 0.146
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 29.74 α = 90.00
b = 59.12 β = 116.37
c = 31.06 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-04-27
  • Released Date: 2011-05-25
  • Deposition author(s): Zeth, K., Albrecht, R.

Revision History

  • 2014-02-05
    Type: Refinement description | Details: REMARK 3
  • 2011-08-10
    Type: Citation | Details: JRNL
  • 2011-08-10
    Type: Version format compliance | Details: REMARK 4