2XWY

STRUCTURE OF MK-3281, A POTENT NON-NUCLEOSIDE FINGER-LOOP INHIBITOR, IN COMPLEX WITH THE HEPATITIS C VIRUS NS5B POLYMERASE

Structural Biology Knowledgebase: 2XWY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.53 Å
  • R-Value Free: 0.310
  • R-Value Work: 0.233

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2XWY

Classification: TRANSFERASE

Total Structure Weight: 60358.81

Macromolecule Entities
Molecule Chains Length Organism Details
RNA-DIRECTED RNA POLYMERASE A 537 Hepatitis c virus EC#: 2.7.7.48 IUBMB
Fragment: NS5B, RESIDUES 2420-2955
Details: RESIDUES 2420-2955 OF HCV POLYPROTEIN
Gene Name(s):

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
IB8
Query on IB8

A (7R)-14-cyclohexyl-7-{[2-(dimethylamino)ethyl](methyl)amino}- 7,8-dihydro-6H-indolo[1,2-e][1,5]benzoxazocine- 11-carboxylic acid
C29 H37 N3 O3
YQUCBFIQSJVCOR-JOCHJYFZSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
IB8 N/A in BindingDB
N/A in BindingMoad
IC50: 6000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.53 Å
  • R-Value Free: 0.310
  • R-Value Work: 0.233
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 66.98 α = 90.00
b = 94.27 β = 90.00
c = 95.14 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-11-06
  • Released Date: 2010-12-22
  • Deposition author(s): Di Marco, S., Baiocco, P.

Revision History

  • 2011-10-26
    Type: Citation | Details: JRNL
  • 2011-10-26
    Type: Version format compliance | Details: REMARK 4