2XCI

Membrane-embedded monofunctional glycosyltransferase WaaA of Aquifex aeolicus, substrate-free form

Structural Biology Knowledgebase: 2XCI SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.207

Literature

Macromolecules
Sequence Display for 2XCI

Classification: TRANSFERASE

Total Structure Weight: 175305.42

Macromolecule Entities
Molecule Chains Length Organism Details
3-DEOXY-D-MANNO-2-OCTULOSONIC ACID TRANSFERASE A, B, C, D 374 Aquifex aeolicus EC#: 2.4.99.12 IUBMB
Gene Name(s): kdtA aq_326
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: MONOTOPIC MEMBRANE PROTEINS

Subgroup Name: Glycosyltransferases

Protein Name: Monofunctional glycosyltransferase WaaA, substrate free


Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PG4
Query on PG4

A, D TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B, C, D GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BME
Query on BME

C BETA-MERCAPTOETHANOL
C2 H6 O S
DGVVWUTYPXICAM-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NI
Query on NI

A, B, C, D NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B, C, D CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.207
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 132.50 α = 90.00
b = 45.82 β = 97.23
c = 144.07 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-04-26
  • Released Date: 2011-05-11
  • Deposition author(s): Schmidt, H., Hansen, G., Hilgenfeld, R., Mamat, U., Mesters, J.R.

Revision History

  • 2012-05-02
    Type: Other | Details: Biological assembly, Citation
  • 2012-04-18
    Type: Non-polymer description | Details: HETSYN
  • 2012-04-18
    Type: Citation | Details: JRNL
  • 2012-04-18
    Type: Version format compliance | Details: REMARK 4