2WCD

CRYSTAL STRUCTURE OF THE ASSEMBLED CYTOLYSIN A PORE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.29 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.228

Literature

Macromolecules
Sequence Display for 2WCD

Classification: TOXIN

Total Structure Weight: 842013.94

Macromolecule Entities
Molecule Chains Length Organism Details
HEMOLYSIN E, CHROMOSOMAL A, B, C..., D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, XA, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X 309 Escherichia coli Fragment: RESIDUES 2-303
Gene Name(s): hlyE clyA hpr sheA ycgD b1182 JW5181
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: ALPHA-HELICAL

Subgroup Name: Adventitious Membrane Proteins: Alpha-helical Pore-forming Toxins.

Protein Name: Cytolysin A (ClyA, aka HlyE)


Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EMC
Query on EMC

A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X ETHYL MERCURY ION
C2 H5 Hg
MJOUBOKSWBMNGQ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.29 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.228
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 111.43 α = 94.44
b = 114.41 β = 85.92
c = 270.55 γ = 102.55

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-03-11
  • Released Date: 2009-05-05
  • Deposition author(s): Mueller, M., Grauschopf, U., Maier, T., Glockshuber, R., Ban, N.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4