2W17

CDK2 IN COMPLEX WITH THE IMIDAZOLE PYRIMIDINE AMIDE, COMPOUND (S)-8B

Structural Biology Knowledgebase: 2W17 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.300
  • R-Value Work: 0.242

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2W17

Classification: TRANSFERASE

Total Structure Weight: 34513.44

Macromolecule Entities
Molecule Chains Length Organism Details
CELL DIVISION PROTEIN KINASE 2 A 299 Homo sapiens EC#: 2.7.11.22 IUBMB
Details: ACETYLATION AT N-TERMINAL METHIONINE
Gene Name(s): CDK2 Gene View CDKN2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
I19
Query on I19

A N-(4-{[(3S)-3-(dimethylamino)pyrrolidin-1- yl]carbonyl}phenyl)-5-fluoro-4-[2-methyl- 1-(1-methylethyl)-1H-imidazol-5-yl]pyrimidin- 2-amine
C24 H30 F N7 O
BACSZMCLZIDTIO-IBGZPJMESA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

A ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
I19 IC50: 2 nM (100) BindingDB

IC50: 2 nM  BindingMOAD
IC50: 2 nM  PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
ACE
Query on ACE
A NON-POLYMER C2 H4 O --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.300
  • R-Value Work: 0.242
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 53.54 α = 90.00
b = 71.82 β = 90.00
c = 71.77 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-10-15
  • Released Date: 2008-11-04
  • Deposition author(s): Jones, C.D., Andrews, D.M., Barker, A.J., Blades, K., Daunt, P., East, S., Geh, C., Graham, M.A., Johnson, K.M., Loddick, S.A., Mcfarland, H.M., Mcgregor, A., Moss, L., Rudge, D.A., Simpson, P.B., Swain, M.L., Tam, K.Y., Tucker, J.A., Walker, M., Brassington, C., Haye, H., Mccall, E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: Compliance with PDBx exchange dictionary V4
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor