2VI2

Atomic resolution (1.05 A) structure of purified Thaumatin I grown in sodium D-tartrate at 4C


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.08 Å
  • R-Value Free: 0.126
  • R-Value Work: 0.119

Literature

Macromolecules
Sequence Display for 2VI2

Classification: PLANT PROTEIN

Total Structure Weight: 22653.43

Macromolecule Entities
Molecule Chains Length Organism Details
THAUMATIN-1 A 207 Thaumatococcus daniellii Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TAR
Query on TAR

A D(-)-TARTARIC ACID
C4 H6 O6
FEWJPZIEWOKRBE-LWMBPPNESA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.08 Å
  • R-Value Free: 0.126
  • R-Value Work: 0.119
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 57.91 α = 90.00
b = 57.91 β = 90.00
c = 150.88 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-11-26
  • Released Date: 2009-02-10
  • Deposition author(s): Jakoncic, J., Asherie, N., Ginsberg, C.

Revision History

  • Version 1_0: 2009-02-10

    Type: Initial release

  • Version 1_1: 2011-05-08

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance