2VHK

ATOMIC RESOLUTION (0.94 A) STRUCTURE OF PURIFIED THAUMATIN I GROWN IN SODIUM L-TARTRATE AT 22C

Structural Biology Knowledgebase: 2VHK SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.94 Å
  • R-Value Free: 0.134
  • R-Value Work: 0.124

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2VHK

Classification: PLANT PROTEIN

Total Structure Weight: 22732.56

Macromolecule Entities
Molecule Chains Length Organism Details
THAUMATIN-I A 206 Thaumatococcus daniellii Fragment: RESIDUES 1-206
Gene Name(s):

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TLA
Query on TLA

A L(+)-TARTARIC ACID
C4 H6 O6
FEWJPZIEWOKRBE-JCYAYHJZSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.94 Å
  • R-Value Free: 0.134
  • R-Value Work: 0.124
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 57.88 α = 90.00
b = 57.88 β = 90.00
c = 149.95 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-11-21
  • Released Date: 2009-02-10
  • Deposition author(s): Jakoncic, J., Asherie, N., Ginsberg, C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4