2PNM

Crystal Structure of VP4 protease from infectious pancreatic necrosis virus (IPNV) in space group P6122

Structural Biology Knowledgebase: 2PNM SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.182

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2PNM

Classification: hydrolase

Total Structure Weight: 20594.00

Macromolecule Entities
Molecule Chains Length Organism Details
Protease VP4 A 193 Infectious pancreatic necrosis virus EC#: 3.4.21 IUBMB
Fragment: VP4hex (residues 524-716)
Mutation: M603M, M630M, M652M, K674A
Gene Name(s):

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.182
  • Space Group: P 61 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 76.95 α = 90.00
b = 76.95 β = 90.00
c = 136.35 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-04-24
  • Released Date: 2007-06-05
  • Deposition author(s): Paetzel, M., Lee, J., Feldman, A.R., Delmas, B.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor