NMR Ensemble

2M54

Refined NMR solution structure of metal-modified DNA

Structural Biology Knowledgebase: 2M54 SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200
  • Conformers Submitted: 20
  • Selection Criteria: Structures with the Lowest Energy

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2M54

Classification: DNA

Total Structure Weight: 10354.30

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*TP*TP*AP*AP*TP*TP*TP*(D33)P*(D33)P*(D33)P*AP*AP*AP*TP*TP*AP*A)-3') A, B 17 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AG
Query on AG

A SILVER ION
Ag
FOIXSVOLVBLSDH-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
D33
Query on D33
A, B DNA linking C8 H13 N2 O6 P --

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 200
  • Conformers Submitted: 20
  • Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2013-02-13
  • Released Date: 2013-05-15
  • Deposition author(s): Kumbhar, S., Johannsen, S., Sigel, R.K., Waller, M.P., Mueller, J.

Revision History

  • 2013-09-25
    Type: Citation | Details: Citation update