2I39

Crystal structure of Vaccinia virus N1L protein

Structural Biology Knowledgebase: 2I39 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.202

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2I39

Classification: Viral Protein

Total Structure Weight: 97133.43

Macromolecule Entities
Molecule Chains Length Organism Details
Protein N1 A, B, C..., D, E, FA, B, C, D, E, F 137 Vaccinia virus Gene Name(s): N1L VACV_BRZ_SERRO2_026 List025 m8028L mO028L VAC_DPP10_037 VAC_DPP11_037 VAC_DPP12_037 VAC_DPP13_037 VAC_DPP15_037 VAC_DPP16_037 VAC_DPP17_037 VAC_DPP19_037 VAC_DPP20_037 VAC_DPP21_037 VAC_DPP25_037 VAC_DPP9_037 VAC_IHDW1_030 VAC_TKT3_017 VAC_TKT4_017 VAC_TP3_032 VAC_TP5_032 VACAC2_037 VACCL3_037 VACV-DUKE-037 VACV_026 VACV_CTGV_CM01_026 VACV_IOC_B141_048 VACV_IOC_B388_048 VACV_TT10_033 VACV_TT11_033 VACV_TT12_033 VACV_TT8_033 VACV_TT9_033

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MPD
Query on MPD

A, E (4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.202
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 68.64 α = 90.00
b = 109.99 β = 110.92
c = 69.58 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-08-17
  • Released Date: 2006-11-21
  • Deposition author(s): Aoyagi, M., Aleshin, A.E., Stec, B., Liddington, R.C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4