2H5S

SA2-13 penam sulfone complexed to wt SHV-1 beta-lactamase

Structural Biology Knowledgebase: 2H5S SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.28 Å
  • R-Value Free: 0.167
  • R-Value Work: 0.154

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2H5S

Classification: HYDROLASE

Total Structure Weight: 30289.76

Macromolecule Entities
Molecule Chains Length Organism Details
SHV-1 beta-lactamase A 265 Klebsiella pneumoniae EC#: 3.5.2.6 IUBMB
Gene Name(s): bla shv1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MA4
Query on MA4

A CYCLOHEXYL-HEXYL-BETA-D-MALTOSIDE
C24 H44 O11
WUCWJXGMSXTDAV-QKMCSOCLSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SA2
Query on SA2

A (3R)-4-[(4-CARBOXYBUTANOYL)OXY]-N-[(1E)-3- OXOPROP-1-EN-1-YL]-3-SULFINO-D-VALINE
4-AZA-5-CARBOXY-6-SULFENATE-6-METHYL-8-OXA- 9-OXO-TRIS-2-TRANS-DECENEDIOIC ACID (Synonym)
C13 H19 N O9 S
ZLJAMSCQNNEARN-QDZHIHTESA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.28 Å
  • R-Value Free: 0.167
  • R-Value Work: 0.154
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 49.81 α = 90.00
b = 55.22 β = 90.00
c = 84.43 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-05-27
  • Released Date: 2006-10-17
  • Deposition author(s): van den Akker, F., Padayatti, P.S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4