211D

THE CRYSTAL AND MOLECULAR STRUCTURE OF A NEW Z-DNA CRYSTAL FORM: D[CGT(2-NH2-A) CG] AND ITS PLATINATED DERIVATIVE

Structural Biology Knowledgebase: 211D SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Observed: 0.170

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 211D

Classification: DNA

Total Structure Weight: 2272.77

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*CP*GP*TP*(1AP)P*CP*(PT(NH3)3)G)-3') A 6 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PTN
Query on PTN

A PLATINUM TRIAMINE ION
H9 N3 Pt
OMAFVUDQJABSNM-PHIGXVQTAM
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SPM
Query on SPM

A SPERMINE
C10 H26 N4
PFNFFQXMRSDOHW-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
1AP
Query on 1AP
A DNA LINKING C10 H15 N6 O6 P DA

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Observed: 0.170
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 25.19 α = 90.00
b = 25.19 β = 90.00
c = 38.95 γ = 120.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 1995-06-13
  • Released Date: 1996-03-22
  • Deposition author(s): Parkinson, G.N., Arvantis, G.M., Lessinger, L., Ginell, S.L., Jones, R., Gaffney, B., Berman, H.M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4