1ZGY

Structural and Biochemical Basis for Selective Repression of the Orphan Nuclear Receptor LRH-1 by SHP

Structural Biology Knowledgebase: 1ZGY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.231

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1ZGY

Classification: TRANSCRIPTION

Total Structure Weight: 33302.04

Macromolecule Entities
Molecule Chains Length Organism Details
Peroxisome proliferator activated receptor gamma A 272 Homo sapiens Fragment: PPARgamma Ligand Binding Domain
Gene Name(s): PPARG Gene View NR1C3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Nuclear receptor subfamily 0, group B, member 2 B 17 Rattus norvegicus Fragment: SHP 2nd LXXLL motif
Gene Name(s): Nr0b2 Shp
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BRL
Query on BRL

A 2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL- 2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL)
BRL49653; ROSIGLITAZONE (Synonym)
C18 H19 N3 O3 S
YASAKCUCGLMORW-HNNXBMFYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
BRL EC50: 2 - 2880 nM (98 - 100) BindingDB
IC50: 30 - 2000 nM (100) BindingDB
Kd: 7 - 4980 nM (100) BindingDB
Ki: 8 - 440 nM (100) BindingDB

IC50: 500 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.231
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 102.60 α = 90.00
b = 54.49 β = 97.50
c = 66.50 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-04-22
  • Released Date: 2005-07-26
  • Deposition author(s): Li, Y., Choi, M., Suino, K., Kovach, A., Daugherty, J., Kliewer, S.A., Xu, H.E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4