1WYK

SINDBIS VIRUS CAPSID PROTEIN (114-264)

Structural Biology Knowledgebase: 1WYK SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.197

Literature

Macromolecules
Sequence Display for 1WYK

Classification: Viral protein hydrolase

Total Structure Weight: 67268.48

Macromolecule Entities
Molecule Chains Length Organism Details
SINDBIS VIRUS CAPSID PROTEIN A, B, C, D 152 Sindbis virus EC#: 3.4.21 IUBMB
Fragment: C-TERMINAL DOMAIN
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DIO
Query on DIO

A, B, C, D 1,4-DIETHYLENE DIOXIDE
C4 H8 O2
RYHBNJHYFVUHQT-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FOR
Query on FOR

A, B, C, D FORMYL GROUP
C H2 O
WSFSSNUMVMOOMR-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.197
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 35.98 α = 109.40
b = 59.54 β = 101.50
c = 71.05 γ = 90.14

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-01-12
  • Released Date: 1998-04-29
  • Deposition author(s): Lee, S., Kuhn, R.J., Rossmann, M.G.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4