1VRT

HIGH RESOLUTION STRUCTURES OF HIV-1 RT FROM FOUR RT-INHIBITOR COMPLEXES

Structural Biology Knowledgebase: 1VRT SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Observed: 0.186

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1VRT

Classification: NUCLEOTIDYLTRANSFERASE

Total Structure Weight: 116285.91

Macromolecule Entities
Molecule Chains Length Organism Details
HIV-1 REVERSE TRANSCRIPTASE A 560 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB
Gene Name(s): gag-pol
HIV-1 REVERSE TRANSCRIPTASE B 440 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB
Gene Name(s): gag-pol

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NVP
Query on NVP

A 11-CYCLOPROPYL-5,11-DIHYDRO-4-METHYL-6H-DIPYRIDO[3,2- B:2',3'-E][1,4]DIAZEPIN-6-ONE
NON-NUCLEOSIDE RT INHIBITOR NEVIRAPINE (Synonym)
C15 H14 N4 O
NQDJXKOVJZTUJA-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
NVP EC50: 20 - >7500 nM (99) BindingDB
IC50: 60 - 160000 nM (99 - 100) BindingDB
Ki: 400 - 36000 nM (99) BindingDB

IC50: 80 nM  BindingMOAD
IC50: 80 nM  PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CSD
Query on CSD
A L-PEPTIDE LINKING C3 H7 N O4 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Observed: 0.186
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 141.80 α = 90.00
b = 116.70 β = 90.00
c = 66.40 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1995-04-19
  • Released Date: 1996-04-03
  • Deposition author(s): Ren, J., Esnouf, R., Garman, E., Somers, D., Ross, C., Kirby, I., Keeling, J., Darby, G., Jones, Y., Stuart, D., Stammers, D.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4