1UUM

RAT DIHYDROOROTATE DEHYDROGENASE (DHOD)IN COMPLEX WITH ATOVAQUONE

Structural Biology Knowledgebase: 1UUM SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.216

Literature

Macromolecules
Sequence Display for 1UUM

Classification: OXIDOREDUCTASE

Total Structure Weight: 83225.95

Macromolecule Entities
Molecule Chains Length Organism Details
DIHYDROOROTATE DEHYDROGENASE A, B 372 Rattus rattus EC#: 1.3.5.2 IUBMB
Gene Name(s): Dhodh
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: MONOTOPIC MEMBRANE PROTEINS

Subgroup Name: Dihydroorotate Dehydrogenases (DHODH, class 2)

Protein Name: Dihydroorotate Dehydrogenase in complex with atovaquone


Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FMN
Query on FMN

A, B FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE (Synonym)
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
AFI
Query on AFI

A, B 2-[4-(4-CHLOROPHENYL)CYCLOHEXYLIDENE]-3,4- DIHYDROXY-1(2H)-NAPHTHALENONE
C22 H19 Cl O3
HKIDMHSZRQSXJE-RNMGOYHCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BOG
Query on BOG

A, B B-OCTYLGLUCOSIDE
C14 H28 O6
HEGSGKPQLMEBJL-RKQHYHRCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ORO
Query on ORO

A, B OROTIC ACID
C5 H4 N2 O4
PXQPEWDEAKTCGB-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
AFI N/A in BindingDB
IC50: 698 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.216
  • Space Group: P 3
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 133.15 α = 90.00
b = 133.15 β = 90.00
c = 50.13 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-01-06
  • Released Date: 2004-04-01
  • Deposition author(s): Hansen, M., Le Nours, J., Johansson, E., Antal, T., Ullrich, A., Loffler, M., Larsen, S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4