1THQ

Crystal Structure of Outer Membrane Enzyme PagP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.255
  • R-Value Work: 0.216

Literature

Macromolecules
Sequence Display for 1THQ

Classification: TRANSFERASE

Total Structure Weight: 21877.21

Macromolecule Entities
Molecule Chains Length Organism Details
CrcA protein A 170 Escherichia coli EC#: 2.3.1.251 IUBMB
Gene Name(s): pagP crcA ybeG b0622 JW0617
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: BETA-BARREL

Subgroup Name: Beta-Barrel Membrane Proteins: Monomeric/Dimeric

Protein Name: PagP outer membrane palimitoyl transferease


Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
LDA
Query on LDA

A LAURYL DIMETHYLAMINE-N-OXIDE
C14 H31 N O
SYELZBGXAIXKHU-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MPD
Query on MPD

A (4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

A ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.255
  • R-Value Work: 0.216
  • Space Group: P 41 2 2

Unit Cell:

Length (Å) Angle (°)
a = 50.67 α = 90.00
b = 50.67 β = 90.00
c = 158.48 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-06-01
  • Released Date: 2004-08-10
  • Deposition author(s): Ahn, V.E., Lo, E.I., Engel, C.K., Chen, L., Hwang, P.M., Kay, L.E., Bishop, R.E., Prive, G.G.

Revision History

  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4