1ROS

Crystal structure of MMP-12 complexed to 2-(1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl)ethyl-4-(4-ethoxy[1,1-biphenyl]-4-yl)-4-oxobutanoic acid

Structural Biology Knowledgebase: 1ROS SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.199

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1ROS

Classification: HYDROLASE

Total Structure Weight: 37647.62

Macromolecule Entities
Molecule Chains Length Organism Details
Macrophage metalloelastase A, B 163 Homo sapiens EC#: 3.4.24.65 IUBMB
Fragment: residues 106-268
Gene Name(s): MMP12 Gene View HME

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DEO
Query on DEO

A, B 2-[2-(1,3-DIOXO-1,3-DIHYDRO-2H-ISOINDOL-2- YL)ETHYL]-4-(4'-ETHOXY-1,1'-BIPHENYL-4-YL)- 4-OXOBUTANOIC ACID
C28 H25 N O6
AQYSXARQCHHHLK-NRFANRHFSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
DEO N/A in BindingDB
IC50: 1.7 nM  BindingMOAD
IC50: 1.7 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.199
  • Space Group: H 3
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 123.20 α = 90.00
b = 123.20 β = 90.00
c = 59.50 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-12-02
  • Released Date: 2004-12-07
  • Deposition author(s): Morales, R., Perrier, S., Florent, J.M., Beltra, J., Dufour, S., De Mendez, I., Manceau, P., Tertre, A., Moreau, F., Compere, D., Dublanchet, A.C., O'Gara, M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4