1Q84

Crystal structure of the mouse acetylcholinesterase-TZ2PA6 anti complex

Structural Biology Knowledgebase: 1Q84 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.184

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1Q84

Classification: HYDROLASE

Total Structure Weight: 129650.41

Macromolecule Entities
Molecule Chains Length Organism Details
Acetylcholinesterase A, B 580 Mus musculus EC#: 3.1.1.7 IUBMB
Gene Name(s): Ache

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TZ4
Query on TZ4

A, B 3,8-DIAMINO-6-PHENYL-5-[6-[1-[2-[(1,2,3,4- TETRAHYDRO-9-ACRIDINYL)AMINO]ETHYL]-1H-1,2,3- TRIAZOL-4-YL]HEXYL]-PHENANTHRIDINIUM
C42 H45 N8
NAARZDJZGYBXKL-UHFFFAOYSA-O
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
P6G
Query on P6G

A HEXAETHYLENE GLYCOL
POLYETHYLENE GLYCOL PEG400 (Synonym)
C12 H26 O7
IIRDTKBZINWQAW-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
TZ4 Ki: 8900 nM (100) BindingDB

Ki: 0.0089 nM  BindingMOAD
Ki: 0.0089 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.184
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 79.27 α = 90.00
b = 111.76 β = 90.00
c = 227.17 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-08-20
  • Released Date: 2004-02-10
  • Deposition author(s): Bourne, Y., Kolb, H.C., Radic, Z., Sharpless, K.B., Taylor, P., Marchot, P.

Revision History

  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4