1LM8

Structure of a HIF-1a-pVHL-ElonginB-ElonginC Complex

Structural Biology Knowledgebase: 1LM8 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.196

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1LM8

Classification: TRANSCRIPTION

Total Structure Weight: 44977.47

Macromolecule Entities
Molecule Chains Length Organism Details
ELONGIN B B 118 Homo sapiens Gene Name(s): TCEB2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
ELONGIN C C 96 Homo sapiens Gene Name(s): TCEB1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Von Hippel-Lindau disease tumor suppressor V 160 Homo sapiens Gene Name(s): VHL Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Hypoxia-inducible factor 1 alpha H 20 Homo sapiens Fragment: Residues 556-575
Mutation: P564X
Gene Name(s): HIF1A Gene View BHLHE78 MOP1 PASD8
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
HYP
Query on HYP
H L-PEPTIDE LINKING C5 H9 N O3 PRO

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.196
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 59.50 α = 90.00
b = 59.50 β = 90.00
c = 245.40 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-04-30
  • Released Date: 2002-06-12
  • Deposition author(s): Min, J-H, Yang, H., Ivan, M., Gertler, F., Kaelin JR., W.G., Pavletich, N.P.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4