1HNV

STRUCTURE OF HIV-1 RT(SLASH)TIBO R 86183 COMPLEX REVEALS SIMILARITY IN THE BINDING OF DIVERSE NONNUCLEOSIDE INHIBITORS

Structural Biology Knowledgebase: 1HNV SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.356
  • R-Value Work: 0.249

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1HNV

Classification: NUCLEOTIDYLTRANSFERASE

Total Structure Weight: 114509.18

Macromolecule Entities
Molecule Chains Length Organism Details
HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P66) A 558 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB
Mutation: C280S
Gene Name(s): gag-pol
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P51) B 427 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB
Mutation: C280S
Gene Name(s): gag-pol

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TBO
Query on TBO

A 5-CHLORO-8-METHYL-7-(3-METHYL-BUT-2-ENYL)- 6,7,8,9-TETRAHYDRO-2H-2,7,9A-TRIAZA-BENZO[CD]AZULENE- 1-THIONE
TBO 8; TIBO R86183 (Synonym)
C16 H20 Cl N3 S
ZNFFMCYSMBXZQU-NSHDSACASA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
TBO EC50: 5.1 nM (98) BindingDB
IC50: 4300 nM (98) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.356
  • R-Value Work: 0.249
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 227.20 α = 90.00
b = 70.20 β = 105.60
c = 105.70 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1995-03-30
  • Released Date: 1995-07-10
  • Deposition author(s): Das, K., Ding, J., Arnold, E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4