1H01

CDK2 IN COMPLEX WITH A DISUBSTITUTED 2, 4-BIS ANILINO PYRIMIDINE CDK4 INHIBITOR

Structural Biology Knowledgebase: 1H01 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.79 Å
  • R-Value Free: 0.219
  • R-Value Work: 0.190

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1H01

Classification: TRANSFERASE

Total Structure Weight: 35100.70

Macromolecule Entities
Molecule Chains Length Organism Details
CYCLIN-DEPENDENT KINASE 2 A 298 Homo sapiens EC#: 2.7.11.22 IUBMB
Gene Name(s): CDK2 Gene View CDKN2

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAL
Query on FAL

A (2R)-1-[4-({4-[(2,5-DICHLOROPHENYL)AMINO]PYRIMIDIN- 2-YL}AMINO)PHENOXY]-3-(DIMETHYLAMINO)PROPAN- 2-OL
C21 H23 Cl2 N5 O2
GNLAGGCSJGJECE-MRXNPFEDSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FBL
Query on FBL

A (2S)-1-[4-({4-[(2,5-DICHLOROPHENYL)AMINO]PYRIMIDIN- 2-YL}AMINO)PHENOXY]-3-(DIMETHYLAMINO)PROPAN- 2-OL
C21 H23 Cl2 N5 O2
GNLAGGCSJGJECE-INIZCTEOSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
FAL N/A in BindingDB
IC50: 22000 nM  BindingMOAD
IC50: 22000 nM  PDBbind
FBL N/A in BindingDB
IC50: 22000 nM  BindingMOAD

Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
KCX
Query on KCX
A L-PEPTIDE LINKING C7 H14 N2 O4 LYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.79 Å
  • R-Value Free: 0.219
  • R-Value Work: 0.190
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 53.13 α = 90.00
b = 70.70 β = 90.00
c = 72.48 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-06-10
  • Released Date: 2003-07-11
  • Deposition author(s): Breault, G.A., Ellston, R.P.A., Green, S., James, S.R., Jewsbury, P.J., Midgley, C.J., Minshull, C.A., Pauptit, R.A., Tucker, J.A., Pease, J.E.

Revision History

  • 2011-10-19
    Type: Version format compliance | Details: REMARK 4
  • 2011-10-19
    Type: Non-polymer description | Details: HET,HETSYN,FORMUL,HETNAM
  • 2011-10-19
    Type: Other | Details: REMARK 525
  • 2011-10-19
    Type: Binding sites and description | Details: REMARK 800,SITE
  • 2011-10-19
    Type: Polymer description | Details: COMPND
  • 2011-10-19
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2011-10-19
    Type: Geometry validation | Details: REMARK 500