1C04

IDENTIFICATION OF KNOWN PROTEIN AND RNA STRUCTURES IN A 5 A MAP OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI

Structural Biology Knowledgebase: 1C04 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 5.0 Å
  • R-Value Work:

Literature

Macromolecules
Sequence Display for 1C04

Classification: RIBOSOME

Total Structure Weight: 82721.45


Macromolecule Entities
Molecule Chains Length Organism Details
RIBOSOMAL PROTEIN L2 A 137 Haloarcula marismortui Fragment: CENTRAL RNA-BINDING DOMAINS
Details: MODELED BY ANALOGOUS PROTEIN OF B. STEAROTHERMOPHILUS TAKEN FROM PDB ENTRY 1RL2
Gene Name(s): rplB
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBOSOMAL PROTEIN L6 B 177 Haloarcula marismortui Details: MODELED BY ANALOGOUS PROTEIN OF B. STEAROTHERMOPHILUS TAKEN FROM PDB ENTRY 1RL6
Gene Name(s): rplF
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBOSOMAL PROTEIN L11 C 67 Haloarcula marismortui Fragment: C-TERMINAL DOMAIN
Details: MODELED BY ANALOGOUS PROTEIN OF B. STEAROTHERMOPHILUS TAKEN FROM PDB ENTRY 1QA6
Gene Name(s): rplK
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBOSOMAL PROTEIN L14 D 122 Haloarcula marismortui Details: MODELED BY ANALOGOUS PROTEIN OF B. STEAROTHERMOPHILUS TAKEN FROM PDB ENTRY 1WHI
Gene Name(s): rplN
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
23S RRNA FRAGMENT E 58 Haloarcula marismortui RNA E. COLI SEQUENCE AND MODEL
23S RRNA FRAGMENT F 29 Haloarcula marismortui RNA RAT SEQUENCE AND MODEL

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 5.0 Å
  • R-Value Observed:
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 212.00 α = 90.00
b = 301.40 β = 90.00
c = 576.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-07-14
  • Released Date: 1999-08-31
  • Deposition author(s): Ban, N., Nissen, P., Capel, M., Moore, P.B., Steitz, T.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4