Crystal structure of the ROQ domain of human Roquin in complex with the Hmg19 stem-loop RNA
DOI:10.2210/pdb4qil/pdb   NDB ID: NA3039
Primary Citation
  •   Molecular Description Hide
    Classification: RNA Binding Protein/rna
    Structure Weight: 86651.10
    Molecule: Roquin-1
    Polymer: 1 Type: protein Length: 330
    Chains: A, B
    Fragment: ROQ domain (UNP residues 88-407)
    Organism: Homo sapiens
    Gene Names: KIAA2025 RNF198 Gene View for RC3H1
    UniProtKB: Search PDB | Q5TC82   Protein Feature View
    Molecule: 5'-R(*CP*UP*CP*CP*CP*UP*UP*CP*UP*GP*UP*GP*AP*AP*GP*GP*GP*GP*A)-3'
    Polymer: 2 Type: rna Length: 19
    Chains: C, D
    Fragment: CDE stem-loop
    Details: Hmgxb3 mRNA (Hmg19)
  •   Structure Validation Hide

  • MolProbity Ramachandran Plot

  •   Related Citations in PDB Entry (REMARK 1) Hide
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
  •   Related PDB Entries Hide
    Identifier Details
    4QIK   Crystal structure of the ROQ domain of human Roquin in complex with the TNF23 RNA duplex 
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CA Ca
  •   Structural Biology Knowledgebase Data Hide
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA3039
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Tan, D.,  Tong, L.

    Deposition:   2014-05-31
    Release:   2014-07-16
    Last Modified (REVDAT):   2014-08-20
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  •   Experimental Details Hide
    Exp. Data:
      Structure Factors
    Resolution[Å]:   2.90
    R-Value: 0.198 (obs.)
    R-Free: 0.251
    Space Group: P 1 21 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 49.60 α = 90.00 
    b = 170.00 β = 97.00 
    c = 51.10 γ = 90.00