Crystal structure of Streptococcus pyogenes Cas9 in complex with guide RNA and target DNA
DOI:10.2210/pdb4oo8/pdb   NDB ID: NA2910
Primary Citation
  •   Molecular Description Hide
    Classification: Hydrolase/dna/rna
    Structure Weight: 395173.08
    Molecule: CRISPR-associated endonuclease Cas9/Csn1
    Polymer: 1 Type: protein Length: 1372
    Chains: A, D
    EC#: 3.1   
    Mutation: ALA:D.840, GLU:D.574, LEU:D.80, ALA:D.10, ALA:A.10, LEU:A.80, GLU:A.574, ALA:A.840
    Organism: Streptococcus pyogenes serotype M1
    Gene Names: cas9 csn1 SPy_1046
    UniProtKB: Search PDB | Q99ZW2   Protein Feature View
    Molecule: RNA (97-MER)
    Polymer: 2 Type: rna Length: 98
    Chains: B, E
    Details: Single guide RNA
    Polymer: 3 Type: dna Length: 23
    Chains: C, F
    Details: Target DNA
  •   Structure Validation Hide

  • MolProbity Ramachandran Plot

  •   Related Citations in PDB Entry (REMARK 1) Hide
  •   Source Hide
    Polymer: 1
    Scientific Name: Streptococcus pyogenes serotype m1   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
  •   External Domain Annotations Hide
  •   Structural Biology Knowledgebase Data Hide
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA2910
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Nishimasu, H.,  Ishitani, R.,  Nureki, O.

    Deposition:   2014-01-31
    Release:   2014-02-26
    Last Modified (REVDAT):   2014-12-24
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  •   Experimental Details Hide
    Exp. Data:
      Structure Factors
    Resolution[Å]:   2.50
    R-Value: 0.223 (obs.)
    R-Free: 0.254
    Space Group: P 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 76.71 α = 97.68 
    b = 105.69 β = 98.43 
    c = 126.82 γ = 100.31