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Crystal structure of Streptococcus pyogenes Cas9 in complex with guide RNA and target DNA
DOI:10.2210/pdb4oo8/pdb   NDB ID: NA2910
4OO8
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase/dna/rna
    Structure Weight: 395173.08
    Molecule: CRISPR-associated endonuclease Cas9/Csn1
    Polymer: 1 Type: protein Length: 1372
    Chains: A, D
    EC#: 3.1   
    Mutation: D10A/C80L/H840A/C574E
    Organism: Streptococcus pyogenes serotype M1
    Gene Names: cas9 csn1 SPy_1046
    UniProtKB: Protein Feature View | Search PDB | Q99ZW2  
    Molecule: RNA (97-MER)
    Polymer: 2 Type: rna Length: 98
    Chains: B, E
    Details: Single guide RNA
    Molecule: DNA (5'-D(*CP*CP*AP*GP*CP*CP*AP*AP*GP*CP*GP*CP*AP*CP*CP*TP*AP*AP*TP*TP*TP*CP*C)-3')
    Polymer: 3 Type: dna Length: 23
    Chains: C, F
    Details: Target DNA
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Streptococcus pyogenes serotype m1   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA2910
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Nishimasu, H.,  Ishitani, R.,  Nureki, O.

    Deposition:   2014-01-31
    Release:   2014-02-26
     
  •   Revision History    Hide
    No revisions since initial release
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.50
    R-Value: 0.223 (obs.)
    R-Free: 0.254
    Space Group: P 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 76.71 α = 97.68 
    b = 105.69 β = 98.43 
    c = 126.82 γ = 100.31