4MKW

Comparison of the structural and dynamic effects of 5-methylcytosine and 5-chlorocytosine in a CpG dinucleotide sequence

  • Classification: DNA
  • Deposited: 2013-09-05 Released: 2013-11-06
  • Deposition author(s): Yin, Y.W.

Structural Biology Knowledgebase: 4MKW SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.22 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.210

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4MKW

Classification: DNA

Total Structure Weight: 7379.20

Macromolecule Entities
Molecule Chains Length Organism Details
5methylC DNA dodecamer A, B 12 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
5CM
Query on 5CM
A, B DNA LINKING C10 H16 N3 O7 P DC

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.22 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.210
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 25.38 α = 90.00
b = 40.27 β = 90.00
c = 65.40 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2013-09-05
  • Released Date: 2013-11-06
  • Deposition author(s): Yin, Y.W.

Revision History

  • 2013-12-11
    Type: Citation | Details: Citation update