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Comparison of the structural and dynamic effects of 5-methylcytosine and 5-chlorocytosine in a CpG dinucleotide sequence
DOI:10.2210/pdb4mkw/pdb   NDB ID: NA2719
4MKW
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: DNA
    Structure Weight: 7379.20
    Molecule: 5methylC DNA dodecamer
    Polymer: 1 Type: dna Length: 12
    Chains: A, B
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    4MGW  Different modification of the same DNA. 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    MG
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    MG Mg
    MAGNESIUM ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    5CM
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    5CM C10 H16 N3 O7 P DC dnaLinking
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA2719
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Yin, Y.W.

    Deposition:   2013-09-05
    Release:   2013-11-06
    Last Modified (REVDAT):   2013-12-11
     
  •   Revision History    Hide
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    2013-12-11
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.22
    R-Value: 0.213 (obs.)
    R-Free: 0.240
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 25.38 α = 90.00 
    b = 40.27 β = 90.00 
    c = 65.40 γ = 90.00